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  • Guide
  • API Reference
  • Changelog

Site Navigation

  • Guide
  • API Reference
  • Changelog

Overview

  • LaminDB - A data framework for biology

How to

  • Query, search & stream
    • Query & search registries
    • Slice & stream arrays
  • Track notebooks, scripts & functions
  • Curate datasets
  • Manage biological ontologies
  • Transfer data

Other topics

  • FAQ
    • Pydantic & Pandera vs. LaminDB
    • Will data get duplicated upon re-running code?
    • Will data & metadata stay in sync?
    • Can I disable tracking run inputs?
    • How do I validate & annotate arbitrary data structures?
    • What happens if I import a schema module without lamindb?
    • Where to store external links and IDs?
    • How do I trash or archive records?
    • How to delete records?
    • Keep artifacts local in a cloud instance
    • Django field validation
    • Why should I not index datasets with gene symbols?
    • How does search work?
  • Storage
    • Track artifacts, in-memory objects & folders [S3 storage]
    • Add, replace, cache and delete artifacts
    • Test AnnDataAccessor
    • Prepare transfer artifacts from a local instance to a cloud instance
    • Transfer artifacts from a local instance to a cloud instance
    • Vitessce integration

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LaminDB - A data framework for biology
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